From d4a396c5c382818f826f4d4399842b12d9d8b970 Mon Sep 17 00:00:00 2001
From: Heng Li <lh3@me.com>
Date: Mon, 31 Mar 2025 23:15:34 -0400
Subject: [PATCH] r1239: resovled #963

---
 minimap.h  | 2 +-
 minimap2.1 | 2 +-
 2 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/minimap.h b/minimap.h
index 20ba73f..26ce258 100644
--- a/minimap.h
+++ b/minimap.h
@@ -5,7 +5,7 @@
 #include <stdio.h>
 #include <sys/types.h>
 
-#define MM_VERSION "2.28-r1238-dirty"
+#define MM_VERSION "2.28-r1239-dirty"
 
 #define MM_F_NO_DIAG       (0x001LL) // no exact diagonal hit
 #define MM_F_NO_DUAL       (0x002LL) // skip pairs where query name is lexicographically larger than target name
diff --git a/minimap2.1 b/minimap2.1
index b1bdf10..a23147e 100644
--- a/minimap2.1
+++ b/minimap2.1
@@ -695,7 +695,7 @@ Spliced alignment for short RNA-seq reads
 .B sr
 Short-read alignment without splicing
 .RB ( -k21
-.B -w11 --sr --frag=yes -A2 -B8 -O12,32 -E2,1 -b0 -r100 -p.5 -N20 -f1000,5000 -n2 -m25
+.B -w11 --sr --frag=yes -A2 -B8 -O12,32 -E2,1 -r100 -p.5 -N20 -f1000,5000 -n2 -m25
 .B -s40 -g100 -2K50m --heap-sort=yes
 .BR --secondary=no ).
 .TP