this is embarrassing: rename again to mappy

This commit is contained in:
Heng Li
2017-09-17 00:05:30 -04:00
parent eaaf53c9b8
commit d5012a1b17
8 changed files with 48 additions and 48 deletions
+2 -2
View File
@@ -1,7 +1,7 @@
#!/usr/bin/env python
import sys, getopt
import mmappy as mm
import mappy as mp
def readfq(fp): # multi-line fasta/fastq parser
last = None
@@ -39,7 +39,7 @@ def main(argv):
if len(args) < 2:
print("Usage: mm2-lite.py <ref.fa>|<ref.mmi> <query.fq>")
sys.exit(1)
a = mm.Aligner(args[0]) # load/build index
a = mp.Aligner(args[0]) # load/build index
if not a:
print("ERROR: failed to load/build index")
return