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https://github.com/lh3/minimap2.git
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this is embarrassing: rename again to mappy
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+2
-2
@@ -1,7 +1,7 @@
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#!/usr/bin/env python
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import sys, getopt
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import mmappy as mm
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import mappy as mp
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def readfq(fp): # multi-line fasta/fastq parser
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last = None
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@@ -39,7 +39,7 @@ def main(argv):
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if len(args) < 2:
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print("Usage: mm2-lite.py <ref.fa>|<ref.mmi> <query.fq>")
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sys.exit(1)
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a = mm.Aligner(args[0]) # load/build index
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a = mp.Aligner(args[0]) # load/build index
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if not a:
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print("ERROR: failed to load/build index")
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return
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