better parameters for short reads

It turns out the key problem is not the minimizer density. It is the max occurrence that tends to affect results more, especially sensitivity. There is still lots of work to do, but for now, it seems a good start.
2026-10-06 10:58:12 +08:00 · 2017-09-12 16:11:23 -04:00
parent eea9e851d8
commit d7f2ac1d4f
3 changed files with 13 additions and 6 deletions
@@ -19,6 +19,7 @@
 #define MM_F_SPLICE_REV  0x200
 #define MM_F_SPLICE_BOTH 0x400
 #define MM_F_NO_SAM_SQ   0x800
+#define MM_F_SR          0x1000

 #define MM_IDX_MAGIC   "MMI\2"