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fixed a bug in chaining

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Heng Li
2017-06-06 14:33:43 -04:00
parent 6d4348db44
commit d816e48fce
3 changed files with 8 additions and 3 deletions
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main.c
+2 -2
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@@ -94,11 +94,11 @@ int main(int argc, char *argv[])
if (w < 0) w = (int)(.6666667 * k + .499);
if (argc == optind) {
fprintf(stderr, "Usage: minimap2 [options] <target.fa> [query.fa] [...]\n");
fprintf(stderr, "Usage: minimap2 [options] <target.fa>|<target.idx> [query.fa] [...]\n");
fprintf(stderr, "Options:\n");
fprintf(stderr, " Indexing:\n");
fprintf(stderr, " -H use homopolymer-compressed k-mer\n");
fprintf(stderr, " -k INT k-mer size [%d]\n", k);
fprintf(stderr, " -k INT k-mer size (no larger than 28) [%d]\n", k);
fprintf(stderr, " -w INT minizer window size [{-k}*2/3]\n");
fprintf(stderr, " -I NUM split index for every ~NUM input bases [4G]\n");
fprintf(stderr, " -d FILE dump index to FILE []\n");