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r141: replaced -b with -a (for SAM output)

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-b sounds like BAM. I like -a better.
This commit is contained in:
Heng Li
2017-07-01 16:54:59 -04:00
parent 67cad9dff3
commit da90b614db
2 changed files with 8 additions and 8 deletions
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minimap2.1
+3 -3
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@@ -1,4 +1,4 @@
.TH minimap2 1 "30 June 2017" "minimap2-2.0-r126-pre" "Bioinformatics tools"
.TH minimap2 1 "1 July 2017" "minimap2-2.0-r141-pre" "Bioinformatics tools"
.SH NAME
.PP
minimap2 - mapping and alignment between collections of DNA sequences
@@ -28,7 +28,7 @@ minimap2
* Long-read alignment with CIGAR:
.RS 4
minimap2
.B -b
.B -a
.RB [ -x
.IR preset ]
.I target.mmi
@@ -212,7 +212,7 @@ the final CIGAR. It is the score of the max scoring segment in the alignment
and may be different from the total alignment score.
.SS Input/output options
.TP 10
.B -b
.B -a
Generate CIGAR and output alignments in the SAM format. Minimap2 outputs in PAF
by default.
.TP