r684: separate end score from min_chain_score

2026-10-04 17:08:12 +08:00 · 2018-02-05 11:40:38 -05:00
parent 3df5015668
commit dbf284b2d9
6 changed files with 9 additions and 4 deletions
@@ -120,6 +120,7 @@ typedef struct {
 	int end_bonus;
 	int min_dp_max;  // drop an alignment if the score of the max scoring segment is below this threshold
 	int min_ksw_len;
+	int min_end_match;
 	int anchor_ext_len, anchor_ext_shift;

 	int pe_ori, pe_bonus;