r684: separate end score from min_chain_score

2026-10-01 10:58:12 +08:00 · 2018-02-05 11:40:38 -05:00
parent 3df5015668
commit dbf284b2d9
6 changed files with 9 additions and 4 deletions
@@ -28,6 +28,7 @@ void mm_mapopt_init(mm_mapopt_t *opt)
 	opt->end_bonus = -1;
 	opt->min_dp_max = opt->min_chain_score * opt->a;
 	opt->min_ksw_len = 200;
+	opt->min_end_match = 200;
 	opt->anchor_ext_len = 20, opt->anchor_ext_shift = 6;
 	opt->mini_batch_size = 500000000;