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r684: separate end score from min_chain_score

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Heng Li
2018-02-05 11:40:38 -05:00
parent 3df5015668
commit dbf284b2d9
6 changed files with 9 additions and 4 deletions
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python/cmappy.pxd
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@@ -30,6 +30,7 @@ cdef extern from "minimap.h":
int end_bonus
int min_dp_max
int min_ksw_len
int min_end_match;
int anchor_ext_len, anchor_ext_shift
int pe_ori, pe_bonus
float mid_occ_frac