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Documented some k8 scripts; more coming

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This commit is contained in:
Heng Li
2018-02-02 13:57:08 -05:00
parent 35d3e064bf
commit ddc31f57ba
8 changed files with 77 additions and 24 deletions
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misc/sam2paf.js
Regular → Executable
+3 -1
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@@ -1,3 +1,5 @@
#!/usr/bin/env k8
var getopt = function(args, ostr) {
var oli; // option letter list index
if (typeof(getopt.place) == 'undefined')
@@ -40,7 +42,7 @@ var c, pri_only = false;
while ((c = getopt(arguments, "p")) != null)
if (c == 'p') pri_only = true;
var file = arguments.length == getopt.ind? new File() : new File(arguments[getopt.ind]);
var file = arguments.length == getopt.ind || arguments[getopt.ind] == "-"? new File() : new File(arguments[getopt.ind]);
var buf = new Bytes();
var re = /(\d+)([MIDSHNX=])/g;