fork/minimap2
1
0
Fork 0
mirror of https://github.com/lh3/minimap2.git synced 2026-10-02 15:58:11 +08:00
Code Issues Packages Projects Releases Wiki Activity

added two more filters

Browse Source
This commit is contained in:
Heng Li
2019-12-24 00:06:44 -05:00
parent 43b0399991
commit de6ad4c1d9
4 changed files with 19 additions and 0 deletions
Download Patch File Download Diff File Expand all files Collapse all files
map.c
+9
View File
@@ -351,6 +351,15 @@ void mm_map_frag(const mm_idx_t *mi, int n_segs, const int *qlens, const char **
chain_post(opt, max_chain_gap_ref, mi, b->km, qlen_sum, n_segs, qlens, &n_regs0, regs0, a);
if (!is_sr) mm_est_err(mi, qlen_sum, n_regs0, regs0, a, n_mini_pos, mini_pos);
if (!is_sr && n_segs == 1) {
for (i = j = 0; i < n_regs0; ++i) {
mm_reg1_t *r = &regs0[i];
if (r->div > opt->flt_max_dv) continue;
if (r->blen < opt->flt_min_blen) continue;
regs0[j++] = regs0[i];
}
n_regs0 = j;
}
if (n_segs == 1) { // uni-segment
regs0 = align_regs(opt, mi, b->km, qlens[0], seqs[0], &n_regs0, regs0, a);