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added the description of "SA" tag. Closes #438

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Heng Li
2019-07-01 09:18:33 -04:00
parent 58c2251b18
commit e026e18439
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@@ -638,6 +638,7 @@ s2 i Chaining score of the best secondary chain
NM i Total number of mismatches and gaps in the alignment NM i Total number of mismatches and gaps in the alignment
MD Z To generate the ref sequence in the alignment MD Z To generate the ref sequence in the alignment
AS i DP alignment score AS i DP alignment score
SA Z List of other supplementary alignments
ms i DP score of the max scoring segment in the alignment ms i DP score of the max scoring segment in the alignment
nn i Number of ambiguous bases in the alignment nn i Number of ambiguous bases in the alignment
ts A Transcript strand (splice mode only) ts A Transcript strand (splice mode only)