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debugging code

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This commit is contained in:
Heng Li
2018-10-29 20:21:10 -04:00
parent e9dcd7b2bc
commit e39080fea6
2 changed files with 9 additions and 4 deletions
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index.c
+5 -4
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@@ -148,12 +148,13 @@ int mm_idx_getseq2(const mm_idx_t *mi, uint32_t rid, uint32_t st, uint32_t en, u
uint32_t i, z;
memset(b, 0, en - st);
z = mm_idx_bed_query(mi, (uint64_t)rid << 32 | st);
for (i = z + 1; i < mi->n_R; ++i) {
for (i = z < 0? 0 : z; i < mi->n_R; ++i) {
uint32_t j, rr, rs, re;
rr = mi->R[i].x >> 32, rs = (uint32_t)mi->R[i].x, re = mi->R[i].end;
if (rr != rid || rs >= en) break;
assert(rs >= st);
for (j = rs; j < re; ++j)
if (rr > rid || rs >= en) break;
if (rr < rid) continue;
re = re < en? re : en;
for (j = st > rs? st : rs; j < re; ++j)
b[j - st] = mi->R[i].score;
}
}