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debugging code

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This commit is contained in:
Heng Li
2018-10-29 20:21:10 -04:00
parent e9dcd7b2bc
commit e39080fea6
2 changed files with 9 additions and 4 deletions
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ksw2_extd2_sse.c
+4
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@@ -112,6 +112,9 @@ void ksw_extd2_sse(void *km, int qlen, const uint8_t *query, int tlen, const uin
if (qd) {
int8_t *tmp = (int8_t*)dv;
for (t = 0; t < tlen; ++t) tmp[t] = -qd[t];
fprintf(stderr, "%d\t%d\t%x\n", tlen, qlen, flag&KSW_EZ_RIGHT);
for (t = 0; t < tlen; ++t) fputc("ACGTN"[target[t]], stderr); fputc('\n', stderr);
for (t = 0; t < tlen; ++t) fputc('0' + qd[t], stderr); fputc('\n', stderr);
}
if (!approx_max) {
H = (int32_t*)kmalloc(km, tlen_ * 16 * 4);
@@ -383,6 +386,7 @@ void ksw_extd2_sse(void *km, int qlen, const uint8_t *query, int tlen, const uin
last_st = st, last_en = en;
//for (t = st0; t <= en0; ++t) printf("(%d,%d)\t(%d,%d,%d,%d)\t%d\n", r, t, ((int8_t*)u)[t], ((int8_t*)v)[t], ((int8_t*)x)[t], ((int8_t*)y)[t], H[t]); // for debugging
}
fprintf(stderr, "score: %d\n", ez->score);
kfree(km, mem);
if (!approx_max) kfree(km, H);
if (with_cigar) { // backtrack