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r1208: reverted RMQ gap coefficient

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Such that minimap2 can give the same alignment in other modes
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Heng Li
2024-03-27 08:48:10 -04:00
parent 119bdc6029
commit e3d8c708ac
4 changed files with 8 additions and 3 deletions
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lchain.c
+1 -1
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@@ -282,7 +282,7 @@ mm128_t *mg_lchain_rmq(int max_dist, int max_dist_inner, int bw, int max_chn_ski
int64_t j;
for (j = i0; j < i; ++j) {
q = kmp_alloc_rmq(mp);
q->y = (int32_t)a[j].y, q->i = j, q->pri = -(f[j] + 0.25 * chn_pen_gap * ((int32_t)a[j].x + (int32_t)a[j].y));
q->y = (int32_t)a[j].y, q->i = j, q->pri = -(f[j] + 0.5 * chn_pen_gap * ((int32_t)a[j].x + (int32_t)a[j].y));
krmq_insert(lc_elem, &root, q, 0);
if (max_dist_inner > 0) {
r = kmp_alloc_rmq(mp);