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drafted the release notes

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Heng Li
2025-04-18 13:17:13 -04:00
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NEWS.md
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Release 2.29-r1283 (18 April 2025)
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Notable changes:
* New feature: added the `splice:sr` preset for short RNA-seq read alignment.
Users may use `-j` to specify known gene annotation to improve spliced
alignment close to the ends of reads. Also added `--write-junc` and
`--pass1` for 2-pass short-read RNA-seq alignment.
* Experimental feature: read splice scores from a file specified by `--spsc`
and consider the scores during base alignment. The feature makes it possible
to apply advanced splice models and to improve spliced alignment.
* Change: adjusted the mapping quality calculation for spliced alignment.
This release produces identical genomic long-read alignment to v2.27. Short
genomic read alignment and the mapping quality of long RNA-seq read alignment
may slightly differ in very rare cases. Minimap2 now supports short/long
genomic/RNA-seq read alignment.
(2.29: 18 April 2025, r1283)
Release 2.28-r1209 (27 March 2024)
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