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reduced gap len to trigger bad seed filtering

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Heng Li
2018-05-01 16:17:21 -04:00
parent 759f8e4ac9
commit e61812ee55
1 changed files with 1 additions and 1 deletions
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align.c
+1 -1
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@@ -495,7 +495,7 @@ static void mm_align1(void *km, const mm_mapopt_t *opt, const mm_idx_t *mi, int
mm_fix_bad_ends(r, a, opt->bw, opt->min_chain_score * 2, &as1, &cnt1); mm_fix_bad_ends(r, a, opt->bw, opt->min_chain_score * 2, &as1, &cnt1);
} }
mm_filter_bad_seeds(km, as1, cnt1, a, 10, 40, opt->max_gap>>1, 10); mm_filter_bad_seeds(km, as1, cnt1, a, 10, 40, opt->max_gap>>1, 10);
mm_filter_bad_seeds_alt(km, as1, cnt1, a, 50); mm_filter_bad_seeds_alt(km, as1, cnt1, a, 30);
mm_adjust_minier(mi, qseq0, &a[as1], &rs, &qs); mm_adjust_minier(mi, qseq0, &a[as1], &rs, &qs);
mm_adjust_minier(mi, qseq0, &a[as1 + cnt1 - 1], &re, &qe); mm_adjust_minier(mi, qseq0, &a[as1 + cnt1 - 1], &re, &qe);
} }