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r1027: renamed hifi to map-hifi; changed default

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Heng Li
2021-05-01 15:22:51 -04:00
parent 7edeec67b0
commit e8823a3709
3 changed files with 11 additions and 4 deletions
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options.c
+3 -2
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@@ -91,10 +91,11 @@ int mm_set_opt(const char *preset, mm_idxopt_t *io, mm_mapopt_t *mo)
io->flag |= MM_I_HPC, io->k = 19;
} else if (strcmp(preset, "map-ont") == 0) {
io->flag = 0, io->k = 15;
} else if (strcmp(preset, "hifi") == 0 || strcmp(preset, "ccs") == 0) {
} else if (strcmp(preset, "map-hifi") == 0 || strcmp(preset, "map-ccs") == 0) {
io->flag = 0, io->k = 19, io->w = 19;
mo->a = 1, mo->b = 4, mo->q = 6, mo->q2 = 26, mo->e = 2, mo->e2 = 1;
mo->occ_dist = 100;
mo->max_gap = 10000;
mo->occ_dist = 500;
mo->min_mid_occ = 100;
mo->min_dp_max = 200;
} else if (strcmp(preset, "asm5") == 0) {