From e88e6ea5d5b0237840c3ed73a41a34add1503fe2 Mon Sep 17 00:00:00 2001 From: Vasimuddin Md Date: Mon, 29 Nov 2021 14:23:58 +0530 Subject: [PATCH] Update README.md --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index 24aaaf5..4117fd1 100644 --- a/README.md +++ b/README.md @@ -40,7 +40,7 @@ The output generated by minimap2 and mm2-fast should match. ```sh diff minimap2_output mm2-fast_output > diff_result ``` -The file ```diff_result``` should empty, meaning a difference of 0 lines. +The file ```diff_result``` should be empty, meaning a difference of 0 lines. ### Advanced options The default compilation using make applies two optimizations: vectorized chaining and sequence alignment. The learned-indexes based seeding is disabled by default as it requires availability of [Rust](https://en.wikipedia.org/wiki/Rust_(programming_language)). This is because the learned hash-table uses an external training library that runs on Rust. Rust is trivial to install, see https://rustup.rs/ and add its path to .bashrc file. Rust installation only takes a few seconds. Following are the steps to enable learned hash table optimization in mm2-fast: