r205: when computing mapq, consider min_chain_sc

Not doing this was a mistake.
2026-09-24 02:08:12 +08:00 · 2017-07-26 11:34:14 -04:00
parent a8ad53ee81
commit e9dc1ce2b6
4 changed files with 8 additions and 7 deletions
@@ -255,7 +255,7 @@ mm_reg1_t *mm_map_frag(const mm_mapopt_t *opt, const mm_idx_t *mi, mm_tbuf_t *b,
 			mm_set_sam_pri(*n_regs, regs);
 		}
 	}
-	mm_set_mapq(*n_regs, regs);
+	mm_set_mapq(*n_regs, regs, opt->min_chain_score);

 	// free
 	kfree(b->km, a);