r205: when computing mapq, consider min_chain_sc

Not doing this was a mistake.
This commit is contained in:
Heng Li
2017-07-26 11:34:14 -04:00
parent a8ad53ee81
commit e9dc1ce2b6
4 changed files with 8 additions and 7 deletions
+1 -1
View File
@@ -49,7 +49,7 @@ void mm_select_sub(void *km, float mask_level, float pri_ratio, int min_diff, in
void mm_filter_regs(void *km, const mm_mapopt_t *opt, int *n_regs, mm_reg1_t *regs);
void mm_join_long(void *km, const mm_mapopt_t *opt, int qlen, int *n_regs, mm_reg1_t *regs, mm128_t *a);
void mm_hit_sort_by_dp(void *km, int *n_regs, mm_reg1_t *r);
void mm_set_mapq(int n_regs, mm_reg1_t *regs);
void mm_set_mapq(int n_regs, mm_reg1_t *regs, int min_chain_sc);
#ifdef __cplusplus
}