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r205: when computing mapq, consider min_chain_sc
Not doing this was a mistake.
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@@ -49,7 +49,7 @@ void mm_select_sub(void *km, float mask_level, float pri_ratio, int min_diff, in
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void mm_filter_regs(void *km, const mm_mapopt_t *opt, int *n_regs, mm_reg1_t *regs);
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void mm_join_long(void *km, const mm_mapopt_t *opt, int qlen, int *n_regs, mm_reg1_t *regs, mm128_t *a);
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void mm_hit_sort_by_dp(void *km, int *n_regs, mm_reg1_t *r);
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void mm_set_mapq(int n_regs, mm_reg1_t *regs);
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void mm_set_mapq(int n_regs, mm_reg1_t *regs, int min_chain_sc);
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#ifdef __cplusplus
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}
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