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r894: added --max-qlen to filter out long query
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@@ -107,6 +107,8 @@ typedef struct {
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int sdust_thres; // score threshold for SDUST; 0 to disable
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int flag; // see MM_F_* macros
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int max_qlen; // max query length
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int bw; // bandwidth
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int max_gap, max_gap_ref; // break a chain if there are no minimizers in a max_gap window
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int max_frag_len;
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