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redesigned indexing and option APIs

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Heng Li
2017-09-14 17:02:01 -04:00
parent 0f7455cefa
commit eb00521d9b
5 changed files with 151 additions and 98 deletions
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mmpriv.h
+2
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@@ -40,6 +40,8 @@ void radix_sort_128x(mm128_t *beg, mm128_t *end);
void radix_sort_64(uint64_t *beg, uint64_t *end);
uint32_t ks_ksmall_uint32_t(size_t n, uint32_t arr[], size_t kk);
void mm_sketch(void *km, const char *str, int len, int w, int k, uint32_t rid, int is_hpc, mm128_v *p);
void mm_write_sam_SQ(const mm_idx_t *idx);
void mm_write_sam_hdr_no_SQ(const char *rg, const char *ver, int argc, char *argv[]);
void mm_write_paf(kstring_t *s, const mm_idx_t *mi, const mm_bseq1_t *t, const mm_reg1_t *r, void *km, int opt_flag);