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support ALT mapping

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Heng Li
2020-01-21 09:17:50 -05:00
parent d2e14705e7
commit eb3ed6993d
10 changed files with 87 additions and 22 deletions
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align.c
+1 -1
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@@ -908,6 +908,6 @@ mm_reg1_t *mm_align_skeleton(void *km, const mm_mapopt_t *opt, const mm_idx_t *m
kfree(km, qseq0[0]);
kfree(km, ez.cigar);
mm_filter_regs(opt, qlen, n_regs_, regs);
mm_hit_sort(km, n_regs_, regs);
mm_hit_sort(km, n_regs_, regs, opt->alt_diff_frac);
return regs;
}