support ALT mapping

2026-09-30 16:08:12 +08:00 · 2020-01-21 09:17:50 -05:00
parent d2e14705e7
commit eb3ed6993d
10 changed files with 87 additions and 22 deletions
@@ -121,6 +121,9 @@ provided as the target sequences, options
 .BR -w ,
 .B -I
 will be effectively overridden by the options stored in the index file.
+.TP
+.BI --alt \ FILE
+List of ALT contigs [null]
 .SS Mapping options
 .TP 10
 .BI -f \ FLOAT | INT1 [, INT2 ]