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support ALT mapping

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Heng Li
2020-01-21 09:17:50 -05:00
parent d2e14705e7
commit eb3ed6993d
10 changed files with 87 additions and 22 deletions
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options.c
+2
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@@ -35,6 +35,8 @@ void mm_mapopt_init(mm_mapopt_t *opt)
opt->min_join_flank_sc = 1000;
opt->min_join_flank_ratio = 0.5f;
opt->alt_diff_frac = 0.15f;
opt->a = 2, opt->b = 4, opt->q = 4, opt->e = 2, opt->q2 = 24, opt->e2 = 1;
opt->sc_ambi = 1;
opt->zdrop = 400, opt->zdrop_inv = 200;