support ALT mapping

2026-09-15 21:17:54 +08:00 · 2020-01-20 19:32:31 -05:00
parent d2e14705e7
commit eb3ed6993d
10 changed files with 87 additions and 22 deletions
--- a/python/cmappy.pxd
+++ b/python/cmappy.pxd
@@ -27,6 +27,7 @@ cdef extern from "minimap.h":
 		int max_join_long, max_join_short
 		int min_join_flank_sc
 		float min_join_flank_ratio
+		float alt_diff_frac
 		int a, b, q, e, q2, e2
 		int sc_ambi
 		int noncan