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code refactoring for mm_reg1_t

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Heng Li
2017-06-29 19:35:38 -04:00
parent cc67f1b781
commit ecedfe5788
4 changed files with 171 additions and 136 deletions
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Makefile
+2 -1
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@@ -2,7 +2,7 @@ CC= gcc
CFLAGS= -g -Wall -O2 -Wc++-compat -Wno-unused-function
CPPFLAGS= -DHAVE_KALLOC
INCLUDES= -I.
OBJS= kalloc.o kthread.o misc.o bseq.o sketch.o chain.o align.o sdust.o \
OBJS= kalloc.o kthread.o misc.o bseq.o sketch.o chain.o align.o hit.o sdust.o \
index.o format.o map.o ksw2_extz2_sse.o
PROG= minimap2
PROG_EXTRA= sdust
@@ -42,6 +42,7 @@ align.o: minimap.h mmpriv.h bseq.h ksw2.h
bseq.o: bseq.h kseq.h
chain.o: minimap.h mmpriv.h bseq.h kalloc.h
format.o: mmpriv.h minimap.h bseq.h
hit.o: mmpriv.h minimap.h bseq.h kalloc.h
index.o: kthread.h bseq.h minimap.h mmpriv.h kvec.h kalloc.h khash.h
kalloc.o: kalloc.h
ksw2_extz2_sse.o: ksw2.h