r763: fine control long join flank len (#128)

2026-10-04 10:38:13 +08:00 · 2018-03-29 14:16:58 -04:00
parent 2d7ec75d50
commit ee4cd089f7
5 changed files with 10 additions and 4 deletions
@@ -115,6 +115,7 @@ typedef struct {

 	int max_join_long, max_join_short;
 	int min_join_flank_sc;
+	float min_join_flank_ratio;

 	int a, b, q, e, q2, e2; // matching score, mismatch, gap-open and gap-ext penalties
 	int noncan;      // cost of non-canonical splicing sites