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r763: fine control long join flank len (#128)

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Heng Li
2018-03-29 14:16:58 -04:00
parent 2d7ec75d50
commit ee4cd089f7
5 changed files with 10 additions and 4 deletions
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python/cmappy.pxd
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@@ -24,6 +24,7 @@ cdef extern from "minimap.h":
int best_n
int max_join_long, max_join_short
int min_join_flank_sc
float min_join_flank_ratio;
int a, b, q, e, q2, e2
int noncan
int zdrop, zdrop_inv