r174: make max-chain-skip work

The max-chain-skip heuristics did not work due to a bug. Without this heuristics, chaining is too slow for long-read overlap.
2026-09-25 19:38:12 +08:00 · 2017-07-12 10:08:06 -04:00
parent 33451aba45
commit eeeb2ffb68
4 changed files with 30 additions and 9 deletions
@@ -19,7 +19,7 @@ void mm_mapopt_init(mm_mapopt_t *opt)
 	opt->min_chain_score = 40;
 	opt->bw = 500;
 	opt->max_gap = 5000;
-	opt->max_chain_skip = 15;
+	opt->max_chain_skip = 50;
 	opt->min_seedcov_ratio = 0.0f;

 	opt->mask_level = 0.5f;