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implemented chain splitting; NOT tested!!!

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Heng Li
2017-06-24 22:57:43 -04:00
parent aa5881e7bb
commit ef5dd318ca
3 changed files with 14 additions and 6 deletions
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mmpriv.h
+1 -1
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@@ -16,7 +16,7 @@ uint32_t ks_ksmall_uint32_t(size_t n, uint32_t arr[], size_t kk);
int mm_chain_dp(int max_dist, int bw, int max_skip, int min_sc, int n, mm128_t *a, uint64_t **_u, void *km);
void mm_align_skeleton(void *km, const mm_mapopt_t *opt, const mm_idx_t *mi, int qlen, const char *qstr, int n_regs, mm_reg1_t *regs, mm128_t *a);
mm_reg1_t *mm_align_skeleton(void *km, const mm_mapopt_t *opt, const mm_idx_t *mi, int qlen, const char *qstr, int *n_regs_, mm_reg1_t *regs, mm128_t *a);
#ifdef __cplusplus
}