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is_hpc is a property of the index

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Heng Li
2017-04-07 15:42:33 -04:00
parent b3bc4911ba
commit f5cdd3f72f
4 changed files with 158 additions and 15 deletions
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minimap.h
+2 -2
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@@ -35,7 +35,7 @@ typedef struct {
} mm_idx_seq_t;
typedef struct {
int32_t b, w, k;
int32_t b, w, k, is_hpc;
uint64_t sum_len; // sum of lengths
uint32_t n_seq; // number of reference sequences
mm_idx_seq_t *seq; // sequence name, length and offset
@@ -79,7 +79,7 @@ extern "C" {
void mm_sketch(void *km, const char *str, int len, int w, int k, uint32_t rid, int is_hpc, mm128_v *p);
// minimizer indexing
mm_idx_t *mm_idx_init(int w, int k, int b);
mm_idx_t *mm_idx_init(int w, int k, int b, int is_hpc);
void mm_idx_destroy(mm_idx_t *mi);
mm_idx_t *mm_idx_gen(struct bseq_file_s *fp, int w, int k, int b, int is_hpc, int mini_batch_size, int n_threads, uint64_t batch_size, int keep_name);
void mm_idx_set_max_occ(mm_idx_t *mi, float f);