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r443: don't filter small cm for split seg

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Heng Li
2017-09-26 16:17:58 -04:00
parent 1b1dd0cd57
commit f611edf6f2
4 changed files with 6 additions and 4 deletions
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minimap.h
+1 -1
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@@ -61,7 +61,7 @@ typedef struct {
typedef struct {
int32_t id; // ID for internal uses (see also parent below)
uint32_t cnt:31, rev:1; // number of minimizers; if on the reverse strand
uint32_t cnt:30, rev:1, seg_split:1; // number of minimizers; if on the reverse strand
uint32_t rid:31, inv:1; // reference index; if this is an alignment from inversion rescue
int32_t score; // DP alignment score
int32_t qs, qe, rs, re; // query start and end; reference start and end