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added --mask-len for #659

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Heng Li
2020-08-21 11:12:50 -04:00
parent ccb0f7b05d
commit f995f55610
8 changed files with 21 additions and 8 deletions
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python/cmappy.pxd
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@@ -22,6 +22,7 @@ cdef extern from "minimap.h":
int min_chain_score
float chain_gap_scale
float mask_level
int mask_len
float pri_ratio
int best_n
int max_join_long, max_join_short