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r1264: added --jump-min-match, default to 3

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To match STAR
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Heng Li
2025-04-06 23:18:55 -04:00
parent af094640e5
commit fbb9c0fcba
5 changed files with 13 additions and 6 deletions
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minimap.h
+2 -2
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@@ -5,7 +5,7 @@
#include <stdio.h>
#include <sys/types.h>
#define MM_VERSION "2.28-r1263-dirty"
#define MM_VERSION "2.28-r1264-dirty"
#define MM_F_NO_DIAG (0x001LL) // no exact diagonal hit
#define MM_F_NO_DUAL (0x002LL) // skip pairs where query name is lexicographically larger than target name
@@ -175,7 +175,7 @@ typedef struct {
int pe_ori, pe_bonus;
int32_t jump_min_alen;
int32_t jump_min_match;
float mid_occ_frac; // only used by mm_mapopt_update(); see below
float q_occ_frac;