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r1264: added --jump-min-match, default to 3

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To match STAR
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Heng Li
2025-04-06 23:18:55 -04:00
parent af094640e5
commit fbb9c0fcba
5 changed files with 13 additions and 6 deletions
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2
options.c
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@@ -63,7 +63,7 @@ void mm_mapopt_init(mm_mapopt_t *opt)
opt->pe_ori = 0; // FF
opt->pe_bonus = 33;
opt->jump_min_alen = 5;
opt->jump_min_match = 3;
}
void mm_mapopt_update(mm_mapopt_t *opt, const mm_idx_t *mi)