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Update paftools.js (#1145)

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In mapeval "-Q INT" reports wrong alignments with mapQ>=INT, not with mapQ>INT
This commit is contained in:
Pesho Ivanov
2024-01-03 09:06:08 -05:00
committed by GitHub
parent bc588c0eeb
commit fc2e1607d7
1 changed files with 1 additions and 1 deletions
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misc/paftools.js
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@@ -2076,7 +2076,7 @@ function paf_mapeval(args)
warn("Usage: paftools.js mapeval [options] <in.paf>|<in.sam>"); warn("Usage: paftools.js mapeval [options] <in.paf>|<in.sam>");
warn("Options:"); warn("Options:");
warn(" -r FLOAT mapping correct if overlap_length/union_length>FLOAT [" + ovlp_ratio + "]"); warn(" -r FLOAT mapping correct if overlap_length/union_length>FLOAT [" + ovlp_ratio + "]");
warn(" -Q INT print wrong mappings with mapQ>INT [don't print]"); warn(" -Q INT print wrong mappings with mapQ>=INT [don't print]");
warn(" -m INT 0: eval the longest aln only; 1: first aln only; 2: all primary aln [0]"); warn(" -m INT 0: eval the longest aln only; 1: first aln only; 2: all primary aln [0]");
exit(1); exit(1);
} }