r121: output QUAL and unmapped to SAM

2026-09-15 13:07:55 +08:00 · 2017-06-30 14:40:54 -04:00
parent d11049eb32
commit fce87ce7bd
5 changed files with 43 additions and 22 deletions
--- a/bseq.c
+++ b/bseq.c
@@ -48,6 +48,7 @@ bseq1_t *bseq_read(bseq_file_t *fp, int chunk_size, int *n_)
 		s = &seqs[n];
 		s->name = strdup(ks->name.s);
 		s->seq = strdup(ks->seq.s);
+		s->qual = ks->qual.l? strdup(ks->qual.s) : 0;
 		s->l_seq = ks->seq.l;
 		size += seqs[n++].l_seq;
 		if (size >= chunk_size) break;