r1025: seed rescuring

2026-10-03 21:08:11 +08:00 · 2021-04-30 17:33:16 -04:00
parent cdbd96be0c
commit feb92d32ea
8 changed files with 130 additions and 56 deletions
@@ -148,7 +148,7 @@ typedef struct {
 	float mid_occ_frac;  // only used by mm_mapopt_update(); see below
 	int32_t min_mid_occ;
 	int32_t mid_occ;     // ignore seeds with occurrences above this threshold
-	int32_t max_occ;
+	int32_t max_occ, max_max_occ, occ_dist;
 	int64_t mini_batch_size; // size of a batch of query bases to process in parallel
 	int64_t max_sw_mat;