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905 Commits 9 Branches 35 Tags
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115 Commits
Author SHA1 Message Date
Heng Li 890d7bbd5b added README for misc scripts 2017-08-04 14:46:31 -04:00
Heng Li 1aca0d5098 copied sam2paf.js here for completeness 2017-08-04 14:44:37 -04:00
Heng Li 68d99f0edb Merge branch 'cs-tag' into dev 2017-08-04 14:31:46 -04:00
Heng Li fd66ab5413 blast-like output working 2017-08-04 14:31:21 -04:00
Heng Li 71f82759af convert paf to maf 2017-08-04 13:05:46 -04:00
Heng Li 8b1e36c609 minor tweaks to the evaluation script 2017-08-01 13:52:29 -04:00
Heng Li ebbe9c1eb8 r219: fixed a bug caused by skipping tandem seeds 2017-07-28 14:06:56 -04:00
Heng Li 8b08a2ec41 added first-only and all-primary modes to eval 2017-07-26 19:32:26 -04:00
Heng Li 9f728dd96a tunable overlap ratio 2017-07-26 18:30:29 -04:00
Heng Li 323293fbda changed the way mapq is counted 2017-07-26 14:20:31 -04:00
Heng Li bd33bed455 make output better 2017-07-26 12:03:42 -04:00
Heng Li a8ad53ee81 evaluating read mapping for pbsim2fa reads 
More functionality to be added later
 2017-07-26 11:17:34 -04:00
Heng Li 4bd7ebc39c convert pbsim .maf to fasta 2017-07-25 13:54:58 -04:00
Heng Li 34ed85d46a optionally print the postions of long indels 2017-07-08 20:16:25 -04:00
Heng Li 2f11a63b22 script to collect alignment stats 2017-07-08 20:01:36 -04:00