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38 Commits

Author SHA1 Message Date
Heng Li
b81d45510e Revision v2 2018-03-16 11:18:06 -04:00
Heng Li
d135feb1a5 response to reviewers' comments, round 2 2018-03-15 21:59:57 -04:00
Heng Li
6e65c5e631 Revision 1 2018-02-09 17:39:02 -05:00
Heng Li
a58b05a61b extend the section on genome alignment 2018-02-09 13:59:00 -05:00
Heng Li
01560f1db0 Revision v1, to be submitted 2018-02-07 11:07:08 -05:00
Heng Li
39535565ee first round of revision 2018-02-06 16:19:22 -05:00
Heng Li
680b971bb0 deleted duplicated entries 2018-01-01 19:52:21 -05:00
Heng Li
f159e1c2d3 new section on HPC k-mers 2017-12-24 19:11:23 -05:00
Heng Li
99879e9e75 a new section on estimating sequence divergence 2017-12-24 12:57:38 -05:00
Heng Li
c969d1a1ce updated direct RNA-seq results; cite syndip 
and a few minor changes
 2017-12-24 11:06:17 -05:00
Heng Li
1617b87ee1 this will become version 3 at arXiv 2017-11-06 10:57:12 -05:00
Heng Li
2191ac58ad two discussion paragraphs; need one more 2017-11-05 12:27:52 -05:00
Heng Li
c2b09356b8 moved conclusion to result; need new discussion 2017-11-04 22:19:46 -04:00
Heng Li
52ffbc9e0c added bowtie2 and snap versions 2017-11-02 15:51:23 -04:00
Heng Li
a9790c0f1d added two bowtie2 numbers for comparison 2017-11-02 15:44:48 -04:00
Heng Li
d0ac78ac08 updated the tech note 2017-11-02 15:37:24 -04:00
Heng Li
1dd221ad82 a bit more on short read mapping 
The tech note still needs improvement. Will do that after the release of v2.3.
 2017-10-22 18:38:35 -04:00
Heng Li
bd04372873 r524: reverted to bwa-mem end bonus 
and reduced the cost of clipping when filtering by identity
 2017-10-20 16:57:31 -04:00
Heng Li
55dcbefe87 updated text (unfinished) 2017-10-20 12:44:54 -04:00
Heng Li
1c948e0d1d added GMAP iso-seq numbers 2017-09-20 23:54:02 -04:00
Heng Li
2641613686 various minor improvements 2017-08-25 17:56:16 +08:00
Heng Li
240f6caaff backup manuscript 2017-08-24 22:05:14 +08:00
Heng Li
b8bdac7e64 backup 2017-08-22 17:45:01 +08:00
Heng Li
19e4b2aab0 backup 2017-08-20 22:10:03 +08:00
Heng Li
8058c85b72 moved appendix to methods; detailed splice aln 2017-08-18 23:33:57 +08:00
Heng Li
53b3265d84 r290: in techrep, explain spliced alignment 2017-08-12 15:40:49 -04:00
Heng Li
648cdd8a3b minor wording changes 2017-08-04 10:21:10 -04:00
Heng Li
7e231cfd3a minor wording improvement 2017-08-03 21:28:01 -04:00
Heng Li
95d3c30ae3 rephrasing a bit to avoid the apparent TeX bug 
Several hours sank into this. Damned...
 2017-08-03 20:19:00 -04:00
Heng Li
f57fd8c790 added one transition phrase 
as there are no subsubsections now
 2017-08-03 18:01:48 -04:00
Heng Li
c70b20ee6d removed subsubsection 
TeX Live 2016 doesn't work with section and content on the same line.
 2017-08-03 17:58:36 -04:00
Heng Li
ed4efd77bc minor modifications 
I will submit this version arXiv. There is definitely room for improvement, but
as a semi-formal technical report, it should be good for now.
 2017-08-03 12:47:36 -04:00
Heng Li
295874ea30 spell check 2017-08-03 12:17:58 -04:00
Heng Li
9ec5f51afb the first draft 2017-08-03 12:12:55 -04:00
Heng Li
28ab4d1f72 backup 2017-08-02 22:59:58 -04:00
Heng Li
6c9390b54a backup 2017-08-02 19:52:31 -04:00
Heng Li
d933a263d7 backup 2017-08-01 13:29:02 -04:00
Heng Li
d6181de844 added tech notes 2017-08-01 10:38:33 -04:00