15 Commits

Author	SHA1	Message	Date
mvdbeek	1bde2cf076	Allow setting max_frag_len on a per alignment level	2018-06-19 14:39:30 -04:00
mvdbeek	31fc0f218a	Allow setting max_frag_len parameter in Aligner class	2018-06-19 14:39:30 -04:00
Heng Li	24a4808826	r718: retrieve sequence from the index	2018-02-23 10:18:26 -05:00
Heng Li	29ed675ee5	bugfix: in-place revcomp() not working	2018-02-20 11:05:54 -05:00
Heng Li	7dc7097208	added reverse complement	2018-02-20 09:41:25 -05:00
Heng Li	090361c25b	fixed a typo in mappy (#117)	2018-02-16 21:10:57 -05:00
Heng Li	46d6349af4	r670: added PE support to mappy ... and minor code cleanup	2018-01-31 11:33:08 -05:00
cwright	4f77b0c1ed	Fix typo in strand property	2017-11-11 01:18:44 +00:00
martinghunt	29a26e3eea	Bug fix with byte strings in Python3	2017-11-09 13:57:15 +00:00
Heng Li	b24c9c90c7	updated mappy and example.c	2017-10-16 11:15:07 -04:00
Heng Li	cf93e5c0a1	more functional minimap2.py; added categories	2017-09-17 17:06:39 -04:00
Heng Li	0b660c70e2	syntax error	2017-09-17 16:02:06 -04:00
Heng Li	5715c423ff	exposed timer and verbose-level to mappy	2017-09-17 15:21:36 -04:00
Heng Li	c8a019fae8	exposed fasta/q reader to mappy	2017-09-17 14:41:59 -04:00
Heng Li	d5012a1b17	this is embarrassing: rename again to mappy	2017-09-17 00:05:30 -04:00