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7e0d70bfd338869cfc479afd1146ad44ef0ebee8
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3 Commits
Author SHA1 Message Date
Heng Li 7e0d70bfd3 r445: pair coordinate adjustment working 
Next: mapq adjustment, which will be tricky...
 2017-09-27 15:38:18 -04:00
Heng Li a349d85280 r444: changed the way orientation is specified 
The old model doesn't work with RF or RR orientation. The new model only works
with paired-end reads. For >2 segments, only FF is supported.
 2017-09-27 12:33:10 -04:00
Heng Li 55d1e4f638 r440: better chain filtering for PE reads 2017-09-26 11:03:36 -04:00