7 Commits

Include renames

Author	SHA1	Message	Date
Heng Li	bd03d975fc	r1268: avoid extra small introns	2025-04-07 23:32:56 -04:00
Heng Li	75619c7b51	r1265: prefer spliced alignment ... mapq needs to be elevated	2025-04-07 00:31:04 -04:00
Heng Li	fbb9c0fcba	r1264: added --jump-min-match, default to 3 ... To match STAR	2025-04-06 23:18:55 -04:00
Heng Li	54a4718c9b	r1259: --jump-bed now functional	2025-04-06 17:12:49 -04:00
Heng Li	dbc12b2838	r1258: update blen, mlen and dp_max0	2025-04-06 15:26:01 -04:00
Heng Li	a8094ad859	r1256: working for one example, but still buggy	2025-04-06 10:33:57 -04:00
Heng Li	1877818239	r1255: moved jump code to a separate file	2025-04-06 09:33:51 -04:00