9 Commits

Author	SHA1	Message	Date
Heng Li	ebbe9c1eb8	r219: fixed a bug caused by skipping tandem seeds	2017-07-28 14:06:56 -04:00
Heng Li	8b08a2ec41	added first-only and all-primary modes to eval	2017-07-26 19:32:26 -04:00
Heng Li	9f728dd96a	tunable overlap ratio	2017-07-26 18:30:29 -04:00
Heng Li	323293fbda	changed the way mapq is counted	2017-07-26 14:20:31 -04:00
Heng Li	bd33bed455	make output better	2017-07-26 12:03:42 -04:00
Heng Li	a8ad53ee81	evaluating read mapping for pbsim2fa reads ... More functionality to be added later	2017-07-26 11:17:34 -04:00
Heng Li	4bd7ebc39c	convert pbsim .maf to fasta	2017-07-25 13:54:58 -04:00
Heng Li	34ed85d46a	optionally print the postions of long indels	2017-07-08 20:16:25 -04:00
Heng Li	2f11a63b22	script to collect alignment stats	2017-07-08 20:01:36 -04:00