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17 lines
314 B
Bash
Executable File
17 lines
314 B
Bash
Executable File
ref_data=$1
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preset=$2
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make clean && make lhash_index=1
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touch temp_read.fastq
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./minimap2 -ax $2 $1 temp_read.fastq >/dev/null
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kv_file=$1"_"$2"_minimizers_key_value_sorted"
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full_path=`readlink -f $kv_file`
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cd ./ext/TAL_offline
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make lisa_hash
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./build-lisa-hash-index $full_path
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rm ../../temp_read.fastq
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