Heng Li 1a7d782131 r273: cdna mapping mode for testing ...

Differences from the typical mapping mode:

* banded alignment disabled
* log gap cost during chaining
* zero long-gap extension during alignment
* up to 100kb (by default) reference gap
* bad seeding not filtered (to tune later)

2017-08-08 11:31:49 -04:00

15 KiB

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