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minimap2/hit.c
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Heng Li b24d68ae9f r557: fixed another mapq underestimate 
When a chain is split during base-level alignment, its chaining score is
reduced. However, the chaining score of its suboptimal chain remains the same.
This leads to underestimated mapping quality.
2017-11-07 23:20:49 -05:00

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