mirror of
https://github.com/lh3/minimap2.git
synced 2026-09-27 07:48:13 +08:00
17 lines
306 B
Bash
Executable File
17 lines
306 B
Bash
Executable File
ref_data=$1
|
|
preset=$2
|
|
|
|
make clean && make lhash_index=1
|
|
touch temp_read.fastq
|
|
./minimap2 -ax $2 $1 temp_read.fastq >/dev/null
|
|
|
|
kv_file=$1"_"$2"_minimizers_key_value_sorted"
|
|
|
|
full_path=`readlink -f $kv_file`
|
|
|
|
cd ./ext/TAL
|
|
make lisa_hash
|
|
./build-lisa-hash-index $full_path
|
|
|
|
rm ../../temp_read.fastq
|