From 0a8de9da0a3bbe32b8c150be20b5af24e1efc068 Mon Sep 17 00:00:00 2001 From: fy3047957834 <3047957834@qq.com> Date: Sun, 24 Oct 2021 20:18:03 +0800 Subject: [PATCH] =?UTF-8?q?=E5=AD=97=E4=BD=93=E5=A4=A7=E5=B0=8F=E4=BF=AE?= =?UTF-8?q?=E6=94=B9=EF=BC=8C=E9=97=AE=E9=A2=98=E5=9B=BE=E5=88=A0=E9=99=A4?= =?UTF-8?q?=EF=BC=8C=E7=AC=AC=E4=B8=80=E7=89=88logo=E6=B5=8B=E8=AF=95?= =?UTF-8?q?=E3=80=82?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit --- Bug.docx | Bin 13767 -> 13066 bytes chart/charts.py | 417 ++---------------- chart/tools.py | 7 +- db.sqlite3 | Bin 745472 -> 745472 bytes static/logo改_3.png | Bin 0 -> 20512 bytes templates/page/about.html | 2 +- templates/page/index.html | 2 +- templates/page/tools.html | 17 +- .../Differential_expression_analysis.html | 2 +- templates/tools/blast.html | 8 +- templates/tools/fastqc.html | 2 +- templates/tools/orf.html | 4 +- templates/tools/pfam.html | 12 +- 13 files changed, 73 insertions(+), 400 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chart_out_path, out_pat plt.savefig(f"{out_path}.pdf") -# 23、密度图(Density_Plot) -# 测试文件 mpg.csv -# 基础参数 图片的长/宽/分辨率/字号/x轴字号/标题的字号、xy轴限制/颜色 - -def Density_Plot(file_path, chart_out_path, x_scale_font_angle, y_scale_font_angle, y_name, x_name, y_font_size, - x_font_size, out_path, - scale_font_size, title, title_font_size, column_name): - df = pd.read_csv(file_path) - - # Draw Plot - plt.figure(figsize=(9.4, 4.25), dpi=180) - sns.kdeplot(df.loc[df[column_name] == 4, column_name], - shade=True, - color="#01a2d9", - label=f"{column_name}=4", - alpha=.7) - sns.kdeplot(df.loc[df[column_name] == 5, column_name], - shade=True, - color="#dc2624", - label=f"{column_name}=5", - alpha=.7) - sns.kdeplot(df.loc[df[column_name] == 6, column_name], - shade=True, - color="#C89F91", - label=f"{column_name}=6", - alpha=.7) - sns.kdeplot(df.loc[df[column_name] == 8, column_name], - shade=True, - color="#649E7D", - label=f"{column_name}=8", - alpha=.7) - - # Decoration - sns.set(style="whitegrid", font_scale=scale_font_size) - plt.title(title, fontsize=title_font_size) - plt.legend() - - plt.xticks(rotation=x_scale_font_angle, fontsize=10) - plt.yticks(rotation=y_scale_font_angle, fontsize=10) - - plt.ylabel(y_name, fontsize=y_font_size) - plt.ylabel(x_name, fontsize=x_font_size) - - plt.savefig(f"{chart_out_path}") # 保存图片 - plt.savefig(f"{out_path}.png") - plt.savefig(f"{out_path}.svg") - plt.savefig(f"{out_path}.pdf") - - # 25、山峰叠峦图(Joy_Plot) # 测试文件 mpg.csv # 基础参数 图片的长/宽/分辨率/字号/x轴字号/标题的字号、xy轴限制/颜色 @@ -834,103 +785,7 @@ def Joy_Plot(file_path, chart_out_path, out_path, title, title_font_size, x_scal plt.savefig(f"{out_path}.pdf") -# 27、箱图（boxplot） - -# 测试文件 mpg.csv -# 基础参数 图片的长/宽/分辨率/字号/x轴字号/标题的字号、xy轴限制/颜色 - -def boxplot(file_path, chart_out_path, out_path, - scale_font_size, title, title_font_size, font_size, font_color, y_scale_min, y_scale_max, x_column_name, - y_column_name, x_scale_font_angle, y_scale_font_angle, y_name, x_name, color): - df = pd.read_csv(file_path) - # Draw Plot - plt.figure(figsize=(9.4, 4.25), dpi=180) - sns.boxplot( - x=x_column_name, - y=y_column_name, - data=df, - notch=False, - palette=color, - ) - - # Add N Obs inside boxplot (optional) - - plt.xticks(rotation=x_scale_font_angle, fontsize=10) - plt.yticks(rotation=y_scale_font_angle, fontsize=10) - - plt.ylabel(y_name, fontsize=12) - plt.ylabel(x_name, fontsize=12) - - def add_n_obs(df, group_col, y): - medians_dict = { - grp[0]: grp[1][y].median() - for grp in df.groupby(group_col) - } - xticklabels = [x.get_text() for x in plt.gca().get_xticklabels()] - n_obs = df.groupby(group_col)[y].size().values - for (x, xticklabel), n_ob in zip(enumerate(xticklabels), n_obs): - plt.text(x, - medians_dict[xticklabel] * 1.01, - "#obs : " + str(n_ob), - horizontalalignment='center', - fontdict={'size': font_size}, - color=font_color) - - add_n_obs(df, group_col=x_column_name, y=y_column_name) - - # Decoration - sns.set(style="whitegrid", font_scale=scale_font_size) - plt.title(title, fontsize=title_font_size) - plt.ylim(y_scale_min, y_scale_max) - plt.savefig(f"{chart_out_path}") # 保存图片 - plt.savefig(f"{out_path}.png") - plt.savefig(f"{out_path}.svg") - plt.savefig(f"{out_path}.pdf") - - -# 28、箱图结合点图（Dot_Box_Plot） -# 测试文件 mpg.csv - - -def Dot_Box_Plot(file_path, chart_out_path, out_path, - title, title_font_size, point_size, line_color, x_scale_font_angle, y_scale_font_angle, y_name, x_name, - x_column_name, y_column_name, group_by_column, legend_name, color): - df = pd.read_csv(file_path) - plt.figure(figsize=(9.4, 4.25), dpi=180) - sns.boxplot( - x=x_column_name, - y=y_column_name, - data=df, - hue=legend_name, - palette=color, - ) - - plt.xticks(rotation=x_scale_font_angle, fontsize=10) - plt.yticks(rotation=y_scale_font_angle, fontsize=10) - - plt.ylabel(y_name, fontsize=12) - plt.ylabel(x_name, fontsize=12) - - plt.legend(loc=9) - sns.stripplot(x=x_column_name, - y=y_column_name, - data=df, - color='#dc2624', - size=point_size, - jitter=1) - - for i in range(len(df[group_by_column].unique()) - 1): - plt.vlines(i + .5, 10, 45, linestyles='solid', colors=line_color, alpha=0.2) - - # Decoration - plt.title(title, fontsize=title_font_size) - plt.savefig(f"{chart_out_path}") # 保存图片 - plt.savefig(f"{out_path}.png") - plt.savefig(f"{out_path}.svg") - plt.savefig(f"{out_path}.pdf") - - -# 28、箱图结合点图（Dot_Box_Plot） +# 28、箱图结合点图（Violin_Plot） # 测试文件 mpg.csv @@ -1007,58 +862,6 @@ def Population_Pyramid(file_path, chart_out_path, out_path, plt.savefig(f"{out_path}.pdf") -# 32、华夫饼图（Waffle_Chart） - -# 测试文件 mpg.csv - - -def Waffle_Chart(file_path, chart_out_path, out_path, rows_number, group_by_column, x_scale_font_angle, - y_scale_font_angle, y_name, x_name, - title_font_size, title): - df_raw = pd.read_csv(file_path) - - from pywaffle import Waffle - - # Prepare Data - df = df_raw.groupby(group_by_column).size().reset_index(name='counts') - n_categories = df.shape[0] - colors = [plt.cm.Set1(i / float(n_categories)) - for i in range(n_categories)] - - # Draw Plot and Decorate - plt.figure(FigureClass=Waffle, - plots={ - '111': { - 'values': - df['counts'], - 'labels': [ - "{0} ({1})".format(n[0], n[1]) - for n in df[[group_by_column, 'counts']].itertuples() - ], - 'legend': { - 'loc': 'upper left', - 'bbox_to_anchor': (1.05, 1), - 'fontsize': 12 - }, - }, - }, - rows=rows_number, - colors=colors, - dpi=180, - figsize=(9.4, 4.25)) - - plt.xticks(rotation=x_scale_font_angle, fontsize=10) - plt.yticks(rotation=y_scale_font_angle, fontsize=10) - plt.title(title, fontsize=title_font_size) - plt.ylabel(y_name, fontsize=12) - plt.ylabel(x_name, fontsize=12) - - plt.savefig(f"{chart_out_path}") # 保存图片 - plt.savefig(f"{out_path}.png") - plt.savefig(f"{out_path}.svg") - plt.savefig(f"{out_path}.pdf") - - # 33、饼图（Pie_Chart） # 测试文件 mpg.csv @@ -1110,177 +913,6 @@ def Treemap(file_path, chart_out_path, out_path, title, group_by_column, title_f plt.savefig(f"{out_path}.pdf") -# 35、柱状图（Bar_Chart -# 测试文件 mpg.csv - - -def Bar_Chart(file_path, chart_out_path, out_path, title, title_font_size, font_size, y_scale_min, y_scale_max, width, - group_by_column, x_scale_font_angle, - y_scale_font_angle, y_name, x_name): - import random - df_raw = pd.read_csv(file_path) - - df = df_raw.groupby(group_by_column).size().reset_index(name='counts') - n = df[group_by_column].unique().__len__() + 1 - all_colors = list(plt.cm.colors.cnames.keys()) - random.seed(100) - c = random.choices(all_colors, k=n) - - # Plot Bars - plt.figure(figsize=(9.4, 4.25), dpi=180) - plt.bar(df[group_by_column], df['counts'], color=c, width=width) - for i, val in enumerate(df['counts'].values): - plt.text(i, - val, - float(val), - horizontalalignment='center', - verticalalignment='bottom', - fontdict={ - 'fontweight': 500, - 'size': font_size - }) - - # Decoration - plt.gca().set_xticklabels(df[group_by_column], - rotation=60, - horizontalalignment='right') - plt.title(title, fontsize=title_font_size) - - plt.xticks(rotation=x_scale_font_angle, fontsize=10) - plt.yticks(rotation=y_scale_font_angle, fontsize=10) - - plt.ylabel(y_name, fontsize=12) - plt.ylabel(x_name, fontsize=12) - - plt.ylim(y_scale_min, y_scale_max) - plt.savefig(f"{chart_out_path}") # 保存图片 - plt.savefig(f"{out_path}.png") - plt.savefig(f"{out_path}.svg") - plt.savefig(f"{out_path}.pdf") - - -# 36、时间序列图（Time_Series_Plot） -# 测试文件 AirPassengers.csv - - -def Time_Series_Plot(file_path, chart_out_path, out_path, - polt_color, title, title_font_size, x_column, y_column, x_font_size, y_font_size, y_scale_min, - y_scale_max, x_scale_font_angle, - y_scale_font_angle, y_name, x_name): - df = pd.read_csv(file_path) - - # Draw Plot - plt.figure(figsize=(9.4, 4.25), dpi=180) - plt.plot(df[x_column], df[y_column], color=polt_color) - # plt.plot(df['date'], df['value'], color='#365770') - # print(file_path) - # Decoration - plt.ylim(y_scale_min, y_scale_max) - xtick_location = df.index.tolist()[::12] - xtick_labels = [x[-4:] for x in df.date.tolist()[::12]] - plt.xticks(ticks=xtick_location, - labels=xtick_labels, - rotation=0, - fontsize=x_font_size, - horizontalalignment='center', - alpha=.7) - plt.yticks(fontsize=y_font_size, alpha=.7) - plt.title(title, fontsize=title_font_size) - plt.grid(axis='both', alpha=.3) - plt.show() - plt.xticks(rotation=x_scale_font_angle, fontsize=10) - plt.yticks(rotation=y_scale_font_angle, fontsize=10) - - plt.ylabel(y_name, fontsize=12) - plt.ylabel(x_name, fontsize=12) - - # Remove borders - plt.gca().spines["top"].set_alpha(0.0) - plt.gca().spines["bottom"].set_alpha(0.3) - plt.gca().spines["right"].set_alpha(0.0) - plt.gca().spines["left"].set_alpha(0.3) - - plt.savefig(f"{chart_out_path}") # 保存图片 - plt.savefig(f"{out_path}.png") - plt.savefig(f"{out_path}.svg") - plt.savefig(f"{out_path}.pdf") - - -# 41、多重时间序列图（Multiple_Time_Series）!!! -# 测试文件 mortality.csv - -def Multiple_Time_Series(file_path, chart_out_path, out_path, - font_size, title, title_font_size, x_font_size, y_font_size, x_scale_min, x_scale_max, - x_scale_font_angle, y_scale_font_angle, y_name, - x_name): - df = pd.read_csv(file_path) - - y_LL = 100 - y_UL = int(df.iloc[:, 1:].max().max() * 1.1) - y_interval = 400 - mycolors = ['tab:red', 'tab:blue', 'tab:green', 'tab:orange'] - - fig, ax = plt.subplots(1, 1, figsize=(9.4, 4.25), dpi=180) - - columns = df.columns[1:] - for i, column in enumerate(columns): - plt.plot(df.date.values, df[column].values, lw=1.5, color=mycolors[i]) - plt.text(df.shape[0] + 1, - df[column].values[-1], - column, - fontsize=font_size, - color=mycolors[i]) - - for y in range(y_LL, y_UL, y_interval): - plt.hlines(y, - xmin=0, - xmax=71, - colors='black', - alpha=0.3, - linestyles="--", - lw=0.5) - - # Decorations - plt.tick_params(axis="both", - which="both", - bottom=False, - top=False, - labelbottom=True, - left=False, - right=False, - labelleft=True) - - # Lighten borders - plt.gca().spines["top"].set_alpha(.3) - plt.gca().spines["bottom"].set_alpha(.3) - plt.gca().spines["right"].set_alpha(.3) - plt.gca().spines["left"].set_alpha(.3) - - plt.title(title, - fontsize=title_font_size) - plt.yticks(range(y_LL, y_UL, y_interval), - [str(y) for y in range(y_LL, y_UL, y_interval)], - fontsize=y_font_size) - plt.xticks(range(0, df.shape[0], 12), - df.date.values[::12], - horizontalalignment='left', - rotation=45, - fontsize=x_font_size) - plt.ylim(y_LL, y_UL) - plt.xlim(x_scale_min, x_scale_max) - - plt.xticks(rotation=x_scale_font_angle, fontsize=10) - plt.yticks(rotation=y_scale_font_angle, fontsize=10) - - plt.ylabel(y_name, fontsize=12) - plt.ylabel(x_name, fontsize=12) - - plt.savefig(f"{chart_out_path}") # 保存图片 - plt.savefig(f"{out_path}.png") - plt.savefig(f"{out_path}.svg") - plt.savefig(f"{out_path}.pdf") - - # 42、双坐标系时间序列图（Plotting_with_different_scales_using_secondary_Y_axis） # 测试文件 economics.csv @@ -1541,6 +1173,7 @@ dev.off() keep_txt_to_file(code, f"{out_path}.R") os.system(f"Rscript {out_path}.R") + os.remove(f"{out_path}.R") def Composition_BarOfColorsDataByGroup(file_path, chart_out_path, out_path, title, caption, subtitle, x_name, y_name, @@ -1598,6 +1231,7 @@ dev.off() keep_txt_to_file(code, f"{out_path}.R") os.system(f"Rscript {out_path}.R") + os.remove(f"{out_path}.R") # 高级参数 x_font_color, y_font_color, x_scale_font_color, y_scale_font_color, title_font_color, legend_name, legend_position @@ -1658,6 +1292,7 @@ dev.off() keep_txt_to_file(code, f"{out_path}.R") os.system(f"Rscript {out_path}.R") + os.remove(f"{out_path}.R") # 高级参数 x_font_color, y_font_color, x_scale_font_color, y_scale_font_color, title_font_color, legend_name, legend_position @@ -1722,6 +1357,7 @@ dev.off() keep_txt_to_file(code, f"{out_path}.R") os.system(f"Rscript {out_path}.R") + os.remove(f"{out_path}.R") # 高级参数 x_font_color, y_font_color, x_scale_font_color, y_scale_font_color, title_font_color, model2, model3, model4, model5 @@ -1804,6 +1440,7 @@ dev.off() keep_txt_to_file(code, f"{out_path}.R") os.system(f"Rscript {out_path}.R") + os.remove(f"{out_path}.R") # 高级参数 x_font_color, y_font_color, x_scale_font_color, y_scale_font_color, title_font_color @@ -1863,6 +1500,7 @@ dev.off() keep_txt_to_file(code, f"{out_path}.R") os.system(f"Rscript {out_path}.R") + os.remove(f"{out_path}.R") # 高级参数 x_font_color, y_font_color, x_scale_font_color, y_scale_font_color, title_font_color @@ -1919,6 +1557,7 @@ dev.off() keep_txt_to_file(code, f"{out_path}.R") os.system(f"Rscript {out_path}.R") + os.remove(f"{out_path}.R") # 高级参数 x_font_color, y_font_color, x_scale_font_color, y_scale_font_color, title_font_color @@ -1973,6 +1612,7 @@ dev.off() keep_txt_to_file(code, f"{out_path}.R") os.system(f"Rscript {out_path}.R") + os.remove(f"{out_path}.R") # 高级参数 x_font_color, y_font_color, x_scale_font_color, y_scale_font_color, title_font_color @@ -2030,6 +1670,7 @@ dev.off() keep_txt_to_file(code, f"{out_path}.R") os.system(f"Rscript {out_path}.R") + os.remove(f"{out_path}.R") # 高级参数 x_font_color, y_font_color, x_scale_font_color, y_scale_font_color, title_font_color @@ -2095,6 +1736,7 @@ dev.off() keep_txt_to_file(code, f"{out_path}.R") os.system(f"Rscript {out_path}.R") + os.remove(f"{out_path}.R") # 高级参数 x_font_color, y_font_color, x_scale_font_color, y_scale_font_color, title_font_color @@ -2157,6 +1799,7 @@ dev.off() keep_txt_to_file(code, f"{out_path}.R") os.system(f"Rscript {out_path}.R") + os.remove(f"{out_path}.R") # 高级参数 x_font_color, y_font_color, x_scale_font_color, y_scale_font_color, title_font_color @@ -2220,6 +1863,7 @@ dev.off() keep_txt_to_file(code, f"{out_path}.R") os.system(f"Rscript {out_path}.R") + os.remove(f"{out_path}.R") # 高级参数 x_font_color, y_font_color, x_scale_font_color, y_scale_font_color, title_font_color @@ -2282,6 +1926,7 @@ dev.off() keep_txt_to_file(code, f"{out_path}.R") os.system(f"Rscript {out_path}.R") + os.remove(f"{out_path}.R") # 高级参数 x_font_color, y_font_color, x_scale_font_color, y_scale_font_color, title_font_color @@ -2341,6 +1986,7 @@ dev.off() keep_txt_to_file(code, f"{out_path}.R") os.system(f"Rscript {out_path}.R") + os.remove(f"{out_path}.R") # 高级参数 x_font_color, y_font_color, x_scale_font_color, y_scale_font_color, title_font_color, legend_name, legend_position, line_color, point_color @@ -2406,6 +2052,7 @@ dev.off() keep_txt_to_file(code, f"{out_path}.R") os.system(f"Rscript {out_path}.R") + os.remove(f"{out_path}.R") # 高级参数 x_font_color, y_font_color, x_scale_font_color, y_scale_font_color, title_font_color, line_color @@ -2458,6 +2105,7 @@ dev.off() keep_txt_to_file(code, f"{out_path}.R") os.system(f"Rscript {out_path}.R") + os.remove(f"{out_path}.R") # 高级参数 x_font_color, y_font_color, x_scale_font_color, y_scale_font_color, title_font_color, legend_name, legend_position, line_color @@ -2518,6 +2166,7 @@ dev.off() keep_txt_to_file(code, f"{out_path}.R") os.system(f"Rscript {out_path}.R") + os.remove(f"{out_path}.R") # 高级参数 x_font_color, y_font_color, x_scale_font_color, y_scale_font_color, title_font_color, legend_name, legend_position, line_color @@ -2577,6 +2226,7 @@ dev.off() keep_txt_to_file(code, f"{out_path}.R") os.system(f"Rscript {out_path}.R") + os.remove(f"{out_path}.R") # 高级参数 x_font_color, y_font_color, x_scale_font_color, y_scale_font_color, title_font_color, legend_name, legend_position, model @@ -2651,6 +2301,7 @@ dev.off() keep_txt_to_file(code, f"{out_path}.R") os.system(f"Rscript {out_path}.R") + os.remove(f"{out_path}.R") # 高级参数 x_font_color, y_font_color, x_scale_font_color, y_scale_font_color, title_font_color, legend_name, legend_position @@ -2711,6 +2362,7 @@ dev.off() keep_txt_to_file(code, f"{out_path}.R") os.system(f"Rscript {out_path}.R") + os.remove(f"{out_path}.R") # 高级参数 x_font_color, y_font_color, x_scale_font_color, y_scale_font_color, title_font_color, legend_name, legend_position, color @@ -2777,6 +2429,7 @@ dev.off() keep_txt_to_file(code, f"{out_path}.R") os.system(f"Rscript {out_path}.R") + os.remove(f"{out_path}.R") # 高级参数 x_font_color, y_font_color, x_scale_font_color, y_scale_font_color, title_font_color, legend_name, legend_position, color @@ -2839,6 +2492,7 @@ dev.off() keep_txt_to_file(code, f"{out_path}.R") os.system(f"Rscript {out_path}.R") + os.remove(f"{out_path}.R") # 高级参数 x_font_color, y_font_color, x_scale_font_color, y_scale_font_color, title_font_color, legend_name, legend_position, line_color @@ -2897,6 +2551,7 @@ dev.off() keep_txt_to_file(code, f"{out_path}.R") os.system(f"Rscript {out_path}.R") + os.remove(f"{out_path}.R") # 基础参数 file_path, chart_out_path, out_path, title, caption, subtitle, title_font_size, @@ -2942,6 +2597,7 @@ dev.off() keep_txt_to_file(code, f"{out_path}.R") os.system(f"Rscript {out_path}.R") + os.remove(f"{out_path}.R") # 高级参数 x_font_color, y_font_color, x_scale_font_color, y_scale_font_color, title_font_color, legend_name, legend_position @@ -3008,6 +2664,7 @@ dev.off() keep_txt_to_file(code, f"{out_path}.R") os.system(f"Rscript {out_path}.R") + os.remove(f"{out_path}.R") # 高级参数 x_font_color, y_font_color, x_scale_font_color, y_scale_font_color, title_font_color, species_1, species_2 @@ -3091,6 +2748,7 @@ dev.off() keep_txt_to_file(code, f"{out_path}.R") os.system(f"Rscript {out_path}.R") + os.remove(f"{out_path}.R") # 高级参数 x_font_color, y_font_color, x_scale_font_color, y_scale_font_color, title_font_color, legend_name, legend_position @@ -3153,6 +2811,7 @@ dev.off() keep_txt_to_file(code, f"{out_path}.R") os.system(f"Rscript {out_path}.R") + os.remove(f"{out_path}.R") # 高级参数 x_font_color, y_font_color, x_scale_font_color, y_scale_font_color, title_font_color @@ -3213,6 +2872,7 @@ dev.off() keep_txt_to_file(code, f"{out_path}.R") os.system(f"Rscript {out_path}.R") + os.remove(f"{out_path}.R") # 高级参数 x_font_color, y_font_color, x_scale_font_color, y_scale_font_color, title_font_color @@ -3281,6 +2941,7 @@ dev.off() keep_txt_to_file(code, f"{out_path}.R") os.system(f"Rscript {out_path}.R") + os.remove(f"{out_path}.R") # 高级参数 x_font_color, y_font_color, x_scale_font_color, y_scale_font_color, title_font_color, legend_name, legend_position @@ -3362,6 +3023,7 @@ dev.off() keep_txt_to_file(code, f"{out_path}.R") os.system(f"Rscript {out_path}.R") + os.remove(f"{out_path}.R") # 高级参数 x_font_color, y_font_color, x_scale_font_color, y_scale_font_color, title_font_color @@ -3418,6 +3080,7 @@ dev.off() keep_txt_to_file(code, f"{out_path}.R") os.system(f"Rscript {out_path}.R") + os.remove(f"{out_path}.R") # 高级参数 x_font_color, y_font_color, x_scale_font_color, y_scale_font_color, title_font_color @@ -3475,6 +3138,7 @@ dev.off() keep_txt_to_file(code, f"{out_path}.R") os.system(f"Rscript {out_path}.R") + os.remove(f"{out_path}.R") # 高级参数 x_font_color, y_font_color, x_scale_font_color, y_scale_font_color, title_font_color @@ -3546,6 +3210,7 @@ dev.off() keep_txt_to_file(code, f"{out_path}.R") os.system(f"Rscript {out_path}.R") + os.remove(f"{out_path}.R") # 高级参数 x_font_color, y_font_color, x_scale_font_color, y_scale_font_color, title_font_color @@ -3600,6 +3265,7 @@ dev.off() keep_txt_to_file(code, f"{out_path}.R") os.system(f"Rscript {out_path}.R") + os.remove(f"{out_path}.R") # 高级参数 x_font_color, y_font_color, x_scale_font_color, y_scale_font_color, title_font_color @@ -3665,6 +3331,7 @@ dev.off() keep_txt_to_file(code, f"{out_path}.R") os.system(f"Rscript {out_path}.R") + os.remove(f"{out_path}.R") # 高级参数 x_font_color, y_font_color, x_scale_font_color, y_scale_font_color, title_font_color @@ -3729,6 +3396,7 @@ dev.off() """ keep_txt_to_file(code, f"{out_path}.R") os.system(f"Rscript {out_path}.R") + os.remove(f"{out_path}.R") # 最后一组 @@ -3862,6 +3530,7 @@ def Aggregated_Pyramids(file_path, char_out_path, out_path, title, caption, subt keep_txt_to_file(code, f"{out_path}.R") os.system(f"Rscript {out_path}.R") + os.remove(f"{out_path}.R") # 基础参数 file_path, char_out_path, out_path, title, caption, subtitle, title_font_size, x_name, x_font_size, x_scale_font_size, y_name, y_font_size, y_scale_font_size, event_1, event_2, event_3, font_size @@ -3989,6 +3658,7 @@ def Areas_Under_a_Time_Series(file_path, char_out_path, out_path, title, caption keep_txt_to_file(code, f"{out_path}.R") os.system(f"Rscript {out_path}.R") + os.remove(f"{out_path}.R") # 基础参数 file_path, char_out_path, out_path, title, caption_1, caption_2, subtitle, title_font_size, font_size @@ -4084,7 +3754,7 @@ def Balloon_Plot(file_path, char_out_path, out_path, title, caption_1, caption_2 keep_txt_to_file(code, f"{out_path}.R") os.system(f"Rscript {out_path}.R") # 基础参数 file_path, char_out_path, out_path, title, caption, subtitle, title_font_size, x_name, x_font_size, x_scale_font_size, y_name, y_font_size, y_scale_font_size, image_name_font_size, mark_country_1, mark_country_2, average_font_size - + os.remove(f"{out_path}.R") # 高级参数 title_font_color, x_font_color, x_scale_font_color, y_font_color, y_scale_font_color, image_name_font_color, average_font_color, mark_color, color @@ -4787,8 +4457,8 @@ def Comparison_with_Bar_Chart_1(file_path, char_out_path, out_path, title, capti """ keep_txt_to_file(code, f"{out_path}.R") - os.system( - f"Rscript {out_path}.R") # 基础参数 file_path, char_out_path, out_path, title, caption, subtitle, title_font_size, x_name, x_font_size, x_scale_font_size, y_scale_font_size, ruler_name, max_number_size, ruler_name_font_size, ruler_number_font_size, country_1, country_2, country_3, country_1_time_1, country_1_time_2, country_2_time_1, country_2_time_2, country_3_time_1, country_3_time_2 + os.system(f"Rscript {out_path}.R") # 基础参数 file_path, char_out_path, out_path, title, caption, subtitle, title_font_size, x_name, x_font_size, x_scale_font_size, y_scale_font_size, ruler_name, max_number_size, ruler_name_font_size, ruler_number_font_size, country_1, country_2, country_3, country_1_time_1, country_1_time_2, country_2_time_1, country_2_time_2, country_3_time_1, country_3_time_2 + os.remove(f"{out_path}.R") # 高级参数 title_font_color, x_font_color, x_scale_font_color, ruler_color, y_scale_font_color, zero_graduation_color, color_1, color_2, max_number_font_color, ruler_number_font_color @@ -7558,4 +7228,5 @@ def chord_Diagram(file_path, file_path_2, char_out_path, out_path, title, captio """ keep_txt_to_file(code, f"{out_path}.R") - os.system(f"Rscript {out_path}.R") \ No newline at end of file + os.system(f"Rscript {out_path}.R") + os.remove(f"{out_path}.R") \ No newline at end of file diff --git a/chart/tools.py b/chart/tools.py index 7c91a4f..7bebac3 100644 --- a/chart/tools.py +++ b/chart/tools.py @@ -357,13 +357,16 @@ class="layui-input" style="height: 25px; width:80px;margin-top: 6px"> def color_js(self): code = "" + init_color = "" for i in self.colors_dict.keys(): if self.colors_dict[i] == "rgb": fl = "rgb" + init_color = "rgb(0,0,0)" else: fl = "hex" + init_color = "#000000" code += """ - %s = "#000000" + %s = "%s" layui.use('colorpicker', function() { var $ = layui.$ @@ -381,7 +384,7 @@ class="layui-input" style="height: 25px; width:80px;margin-top: 6px"> }); }) - """ % 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- +

diff --git a/templates/page/index.html b/templates/page/index.html index f524e69..faec845 100644 --- a/templates/page/index.html +++ b/templates/page/index.html @@ -13,7 +13,7 @@
- + diff --git a/templates/page/tools.html b/templates/page/tools.html index 80d2c73..9f74bb1 100644 --- a/templates/page/tools.html +++ b/templates/page/tools.html @@ -41,27 +41,26 @@
  • Basics
    -
    blast
    -
    genbank to fasta
    -
    gff to gtf
    -
    orf
    -
    序列基础
    +
    blast
    +
    gbk to fa
    +
    gff to gtf
    +
    orf
    +
    seq basics
  • Gene Family
    -
    pfam
    +
    pfam
  • Omics
    -
    Differential expression - analysis
    +
    deg
    -
    fastqc
    +
    fastqc
    • diff --git a/templates/tools/Differential_expression_analysis.html b/templates/tools/Differential_expression_analysis.html index 53cf7ec..8aa9d02 100644 --- a/templates/tools/Differential_expression_analysis.html +++ b/templates/tools/Differential_expression_analysis.html @@ -16,7 +16,7 @@
    - +